Ordered alphabetically by student's last name
Amiri | Edwards | Johnson | Panunto | Taylor | Zaccaria |
Bedi | Fisher |
Kane | Rodriguez | Turley | |
Cordova | Gibson |
Lingham | Schieler | Welch | |
Crum | Irvin | McKee | Sun | Willis |
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Sequencing the Unique Short Region of Infectious Laryngotracheitis Virus Tanu Bedi, Ida Chung, Cynthia M. Boettger, and Calvin L. Keeler Jr. Department of Animal and Food Science Infectious laryngotracheitis
virus (ILTV) is a herpesvirus which causes an extremely contagious
respiratory disease of chickens. The disease is characterized by
signs of respiratory distress and the mortality rate can be as high as
fifty percent. The ILTV genome is 148,665 base pairs in length. The
unique short (US) region of the genome (~14,000 base pairs) contains 9
genes including 6 glycoprotein genes. Glycoproteins play an
important role in eliciting an immune response from the host , and in
viral attachment and pathogenicity. / / The goal of this project
is to compare the US sequence of two ILTV field isolates, two
vaccine strains and a standard challenge virus. This will be
accomplished by amplifying, cloning, sequencing, and then comparing the
sequence of this region of the viral genome from these five
strains. The purpose of this comparison is to observe any
evolutionary modifications over time. Also, if sequence polymorphisms
are found between the five strains, they can be used in the future to
develop novel diagnostic tools.
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The Effect of Thymol on Intracellular and Extracellular Reactive Oxygen Species Production by Bovine Neutrophils Sarah L. Cordova, Changqing Wu, Kerrie A. Davison, and Tanya F. Gressley Department of Animal and Food Science Mastitis is a bacterial
infection of the udder and is the most common disease of commercial
dairy cattle the United States. One reason that mastitis is so
prevalent is that the natural immune response to mastitis can be
harmful to the cow. Neutrophils, which are white blood cells involved
in the innate immune response, release intracellular and extracellular
reactive oxygen species (ROS). Intracellular ROS, produced when
neutrophils engulf bacteria, are necessary because they enable the
neutrophil to kill bacteria. Extracellular ROS can destroy both
extracellular bacteria as well as healthy tissue. We are interested in
identifying antioxidant compounds that will reduce mammary tissue
damage from extracellular ROS while preserving the neutrophil’s
function. In this experiment, thymol, a natural compound found in thyme
was tested using several different in vitro assays to determine its
impact on total ROS production, extracellular ROS production, and
intracellular ROS production. Neutrophils were collected from healthy
cows and incubated without thymol or one of four different
concentrations of thymol: 0.0001 mg/ml, 0.001 mg.ml, 0.01 mg/ml, and
0.1 mg/ml. Thymol dose-dependently inhibited extracellular ROS using an
isoluminol chemiluminescence assay. We are currently conducting luminol
chemiluminescence assays to determine total ROS production, CM-H2DCFDA
assays to determine intracellular ROS production, and an S.aureus kill
assay to evaluate neutrophil function. If results indicate that thymol
has the desired effect on ROS, then it will be tested in vivo to
determine if it is helpful in fighting mastitis.
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Impacts of Shoreline Modification on the Nearshore Fish Assemblage in Delaware Bay Kevin P. Crum, Richard G. Balouskus, and Timothy E. Targett University of Delaware School of Marine Science and Policy Shoreline modifications such as
bulkheading and riprap impact nearshore habitat for estuarine nekton by
altering water quality, wave dynamics, and nutrient inputs. This
study quantified differences in the abundance and diversity of fish
species along various types of shorelines on a localized scale.
Sampling sites were located within a 200m stretch of shoreline along
the University of Delaware campus in Lewes, Delaware. Five types
of shorelines were examined: bulkhead, riprap, Spartina marsh, sand
beach, and Phragmites marsh. Seine hauls were made parallel to
shore when water depth reached approximately .25m at each site.
Preliminary results suggest differences in fish assemblages between
shoreline types. Low species diversity and high fish abundance
were found at the bulkhead and beach sites, whereas the riprap
exhibited intermediate diversity and abundance. The highest
species diversity was found at Spartina and Phragmites, with Spartina
supporting intermediate abundance and Phragmites supporting low
abundance. Menidia menidia (Atlantic silverside) was the
predominant species at all sites, and its relative abundance was
correlated with species diversity. High M. menidia abundance
corresponded with low species diversity (M. menidia accounted for ≥94%
of fish caught at the bulkhead and beach, 90% at the riprap, 80% at the
Spartina, and 65% at the phragmites). The only shoreline types
where any species other than M. menidia represented >5% of the total
fish population were the Spartina and Phragmites sites, exemplifying
the importance of preserving even small stretches of natural marsh to
protect ecosystem diversity. This research was supported by NOAA
(CSCOR) and NSF EPSCoR Grant EPS-0447610.
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A
PREDICTIVE HABITAT MODEL FOR THE GRASSHOPPER SPARROW IN DELAWARE
Eric Irvin, Ken Duren, Christopher K. Williams, Jeffrey L. Buler, and Bill Jones Department of Entomology and Wildlife Ecology Many grassland songbirds across
North America, including the grasshopper sparrow (Ammodramus
savannarum), are reported to be experiencing drastic declines in
population levels. Since 1967, there has been a 65% decrease in the
population of grasshopper sparrows across their range. Most of
the decline has been directly attributed to the loss of grassland
habitat. As a result, it is imperative to determine the locations
of remaining suitable habitat for successful management of the species.
From May 15 to August 15 2009, we conducted 3 replicates of 180
point-count surveys to sample the presence of grasshopper sparrows in
Delaware. We recorded presence/absence and associated habitat to 1)
build a predictive habitat distribution model that identifies
scale-dependent relationships in habitat use, 2) produce a habitat
suitability map that reflects predicted presence of breeding
grasshopper sparrows within Delaware, and 3) use model outcome and
distribution map to target future land conservation of existing habitat
and optimize the impact of management efforts. Data from 3 additional
replicates of 180 point-count surveys which were conducted from May 15
to August 15 2008 will be compiled with this year’s data. Two hundred
and seventy points will be randomly selected to construct the model. We
will use the remaining 90 points to validate the model. Grasshopper
sparrows were detected at 121 points out of the total 360 points.
Funding provided by the Undergraduate Research Program, a community
based research grant from the Office of Service Learning, and the
Department of Natural Resources and Environmental Control.
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The use of Neem oil may provide
an alternative pesticide for those in the poultry industry as well as
backyard poultry owners looking for natural pesticide remedies.
The
neem tree (Azadirachta indica) produces an oil that has biocidal
effects against nearly 200 arthropod pests without any adverse effects
on most non-target organisms. There are three main external
parasites
in poultry and they are as follows: Northern Fowl Mite, Chicken
Louse,
and Shaft Louse. It was the objective of this study to determine
the
effectiveness of neem oil over a four week period when sprayed on 15
laying hens infested with external parasites. The information
generated in this trial will benefit producers of organic poultry,
natural poultry, and small flock owners. Birds were housed
individually and monitored daily. A 1% neem oil solution was
applied
once weekly (Mondays) and the external parasite population was counted
daily in three areas of the bird (vent, wing, back) for the remainder
of the week. External parasites were counted on both feathers and
skin
when they fell within a 1 x 1in2 template. Preliminary
results in
this small scale trial indicate that there is a significant difference
in birds spayed with neem when compared to control birds (not sprayed).
Birds sprayed with neem had a lower level of external parasites.
Additionally, there were significant differences between the three
areas of the bird where parasites were counted (vent, wing,
back).
These results show that neem oil does have an effect the number of
external parasites.
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Tidal Marsh Arthropod Diversity and Abundance in Response to Prescribed Fire Cassandra L. Kane, Rebecca A. Kern, and W. Gregory Shriver Department of Entomology and Wildlife Ecology Natural fire regimes are an
important component of many disturbance driven ecosystems, therefore
the absence of fire in fire dependant ecosystems can change the overall
state of the system. The interruption of these fire cycles has created
the need to use prescribed fire to attempt to restore more natural fire
regimes. The Blackwater National Wildlife Refuge (Cambridge, Maryland),
is a tidal marsh dominated refuge located along the Chesapeake Bay. The
Refuge has been using prescribed fire to burn the marsh for over 30
yrs. The natural fire regime in tidal marsh systems is not clearly
understood; therefore the refuge is conducting a study to determine the
effect of prescribed fire on different tidal marsh attributes (i.e.
vegetation, physical properties, and birds). No studies have previously
been conducted to determine the effects of the fire regime on
arthropods; important bird food. The objectives of this study were to
determine the arthropod diversity and abundance in relation to time
since prescribed fire. Arthropods were sampled from tidal marshes
located in four treatment types; annual burn, 3-5 yrs post fire, 5-7
yrs post fire, and > 7 yrs post fire. There are 25 samples from each
burn class. At each point, five one-meter square arthropod collection
points were randomly selected. At each location we sampled the
vegetation and used a vacuum sampler to collect arthropods from each 1
m square. Arthropods were placed into test tubes to be taken to the lab
for identification. Supported by Delaware EPSCoR, through National
Science Foundation Grant.
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Environmental Assessment of Worton and Mill Creeks: Preliminary Bathymetric Mapping Greg M. McKee, Matthew H. Panunto, Kashi N. Subedi, and Bruce E. Allison Wesley College, Environmental Sciences An environmental analysis of
any landscape that involves a body of water will include bathymetric
data. For navigational bodies of water, National Oceanic and
Atmospheric Association (NOAA) nautical depth charts are
available. However, there is a possibility that the NOAA depth
charts do not accurately reflect the effects of channelization and
siltation, which can produce inaccurate simulation data when utilized
in computer models. A project was initiated to compare measured depth
soundings with published NOAA depth charts to determine if current
nautical charts depict sufficiently detailed depth information for
environmental assessments and modeling use. The objective of this
research was to compare water depth and perimeter locations on current
NOAA nautical charts with field measurements at Worton and Mill
Creeks. Water depths and their respective GPS coordinates were
determined in a grid layout for the full length of Worton and Mill
Creeks. The grid point depths and GPS coordinates were imported
into ArcGIS 9.3 and Surfer 8 to create interpolated images of the
creek’s physical dimensions. These images were compared to the
current NOAA navigational charts. Preliminary results indicated
that there are discrepancies in the creek perimeters and depth values
of current nautical charts when compared to the field
measurements. For environmental assessments or modeling
applications, measured bathymetric data may be required. These
depth measurements will eventually be utilized in the AQUATOX model and
an analysis of the model output will be completed. This project
was supported by Delaware EPSCoR, through National Science Foundation
Grant EPS-0447610 and Wesley College.
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Preliminary
Description of the Chemical Makeup of Worton and Mill Creek
Matthew H. Panunto, Greg M. McKee, Kashi N. Subedi and Bruce E. Allison Wesley College, Environmental Sciences Water quality not only
encompasses the physical and chemical properties of a body of water,
but it is also an indicator of the ability of a water body to sustain
aquatic life. Surrounding land use, non point source pollutants
and natural modifications to the aquatic landscape affect water
quality. Through monitoring water quality properties and land use
practices, a better understanding of the impact these conditions have
on marine life is achieved. The objective of this research was to
determine the chemical makeup of Worton and Mill Creek and to use the
Long-term Hydrologic Impact Assessment (L-THIA) Model to predict
nitrogen, phosphorus and sediment loadings to these water bodies.
Chlorophyll, turbidity and dissolved oxygen were measured in a
horizontal grid at a depth of 60 cm throughout the length of Worton and
Mill Creeks. At each measurement point, GPS coordinates were
taken. Diurnal runs were completed for three specific locations
and chlorophyll, turbidity and dissolved oxygen were measured at 30 cm
depth intervals. Water quality measurements were taken with a YSI
Sonde 6600 Environmental Monitoring System and analyzed using Microsoft
Excel. Water quality data and GPS coordinates were imported into
ArcGIS 9.3 and Surfer 8 to create interpolated images of the creek’s
chemical environment. These parameter values will be
eventually used in the AQUOTOX model to assess changes over time.
This assessment will assist scientists and managers in making sound
environmental decisions. This project described was supported by
Delaware EPSCoR, through National Science Foundation Grant EPS-0447610
and the Wesley College.
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Comparative study of sulfur metabolism in model green sulfur bacteria to new isolates from the Mid-Atlantic Jesse L. Rodriguez, Jennifer Hiras, and Thomas E. Hanson Delaware Biotechnology Institute Chlorobium tepidum (syn. Chlorobaculum tepidum) has become
the model organism for the study of anaerobic sulfur oxidation in green
sulfur bacteria (GSB). Anaerobic sulfur oxidation in the
biogeochemical sulfur cycle prevents the efflux of reduced sulfur
compounds from anaerobic environments into the atmosphere. C. tepidum utilizes sulfide,
elemental sulfur, and thiosulfate as electron donors for
photosynthesis. The genome of C.
tepidum has been sequenced and annotated, identifying many genes
encoding proteins hypothetically involved in sulfur oxidation.
These genes are tightly clustered in specific regions of the genome,
which has allowed the use of in vitro transposon mutagenesis (IVTM) to
create knock-out mutants that focus on these specific regions. One
particular cluster of interest is that containing the gene which
encodes a RubisCO-like protein (RLP). A mutant strain lacking the
RLP was found to be defective in elemental sulfur and thiosulfate
oxidation. In this study, additional mutant strains containing
transposon insertions in genes near the RLP-encoding gene were screened
for growth on sulfide, thiosulfate, or the combination as electron
donors in Pf-7 medium. The results will indicate whether or not genes
in the RLP region, aside from that encoding the RLP itself, are
required for anaerobic sulfur oxidation in C. tepidum. This knowledge
will help to refine models of sulfur oxidation pathways in this model
organism and in general. In addition, screening of sulfur
compound utilization by new, local isolates of green sulfur bacteria
will also be reported. This project was supported by Delaware EPSCoR,
through National Science Foundation Grant EPS-0447610 .
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Characterization of the Summer Larval Fish Assemblage in Delaware Bay and the Effect of Vertical Distribution on Measured Larval Density and Diversity Brittany M. Schieler, Edward A. Hale, and Timothy E. Targett University of Delaware, School of Marine Science and Policy Estuarine nursery habitats play an indispensable role in the early life history of many important marine fishes. Successful ingress and retention of the larval stages of these species into estuaries is linked closely with the continuation of the adult stock. Consequently, it is important to understand the processes of larval ingress and retention. It is also known that some larval fish species utilize vertical migrations in order to facilitate up-estuary transport and retention, causing vertical stratifications in density and diversity. To examine larval fish ingress and retention in Delaware Bay, a two-fold study of icthyoplankton assemblage was conducted throughout the summer of 2009 at Roosevelt Inlet, near the mouth of the Delaware Bay. Mid-water samples were taken once a week from June 2- July 21 as part of a long-term effort to characterize weekly variability in the icthyoplankton assemblage. Changes in larval density, mean length, and diversity are reported. An intensive study sampling both the surface and bottom of the water column was conducted every other night from July 26 –August 5 to determine if vertical position of sampling significantly influenced measured larval density and diversity. Initial observations indicate that many species, especially the most common species Anchoa mitchilli (Bay Anchovy), are more abundant in the surface waters during the night-time flood tides. This research is part of an ongoing study aimed to better understand variability in larval ingress and retention across spatial, temporal, and species boundaries in Delaware Bay. Research supported by NOAA (Sea Grant) and NSF EPSCoR Grant EPS-0447610. |
Quantifying the Impacts of Alien Plants on Native Spider Diversity Catherine C. Sun and Douglas Tallamy Department of Entomology and Wildlife Ecology Invasive, nonnative plants
often displace native ones, altering ecological services provided by
the area and reducing available resources for higher trophic levels,
including herbivores and predators. Such losses are often
disproportionately magnified – a phenomenon called ‘trophic skew’ – and
if left unchecked can possibly degrade an entire ecosystem. This study
quantified the impact of nonnative plants on spider densities and
diversities. Spiders prey upon small native-plant-dependent herbivorous
insects and therefore may be negatively impacted by nonnative plants.
Spiders collected from 13 pairs of congeneric native and nonnative
plants were counted, identified, and weighed. Spider abundance and
richness were greater on 8 of 13 native
plants than on their nonnative counterparts. However, Simpson’s
diversity indices and preliminary analysis showed no significant
differences in spider diversity between native and nonnative plants.
Furthermore, analyses suggest that not all nonnative plants are equally
unsupportive of spiders, nor that all native plants are equally
supportive. Further investigation is required in order to
understand fully the effect of alien plants on spider diversity.
Funding generously provided by NSF EPSCoR, Grant EPS-0447610. /
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Changes
in the Antioxidant Content of Tomato and Watermelon During Storage
Alexandra Turley and Changqing Wu Department of Food Science, University of Delaware Antioxidants are a class of
compounds that protect cells from the damaging effects of reactive
oxygen species. Many foods, especially fruits and vegetables, are good
sources of antioxidants. Because the antioxidant content of fruits and
vegetables changes after harvest, there is interest in the optimum
storage time and temperature for produce. Studies have been done on
pre-market storage conditions, but not on home storage conditions.
Tomatoes and watermelons are two commonly consumed fruits with abundant
antioxidants and are used in our study as representative produce to
study the effect of home storage conditions on the antioxidant content.
In this study, tomato and watermelon samples were kept at room
temperature at 22°c and in the refrigerator at 4°c for two
weeks to mimic consumer behaviors. Samples were tested every three days
for their antioxidant activities using the
1,1-Diphenyl-2-picrylhydrazyl (DPPH) assay and the Folin-Ciocalteau
assay. The samples were also extracted and tested for lycopene content
and total antioxidant activity using both hydrophilic and lipophilic
oxygen radical absorbance capacity (ORAC) assays. The tomato samples
initially had a phenolic content of 305.1 mg Gallic acid equivalents
(GAE)/kg juice, with a final content of 233.7 mgGAE/kg juice and 231.1
mgGAE/kg juice for the tomatoes stored at 22°c and at 4°c,
respectively. The watermelon stored at 4°c had an initial content
of 83.0 mgGAE/kg juice and a final content of 62.4 mgGAE/kg juice. The
room temperature and the 4°c tomatoes had similar DPPH scavenging
effects, with a peak in antioxidant activity at nine days. In general,
tomatoes were found to have greater antioxidant content than
watermelons under all storage conditions.
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Expression of Involucrin in the Normal and Ulcerated Bovine Sole Region Amanda L. Welch, Trista L. Reeder and Robert M. Dyer Department of Animal and Food Sciences Accounting for 12% of diagnosed
conditions and 17% of all deaths in US dairy cattle, lameness from claw
horn lesions in cattle is the second most important health problem in
the modern dairy industry. Sole ulceration is the most serious claw
horn problem and arises from defective, poor quality claw horn
production. Bovine claw horn forms by growth of basal keratinocytes
located in the deepest basal cell layer of the claw epidermis while
maturation, keratinization and cornification occurs in the suprabasal
layers. Changes in keratinocyte growth, keratinization and
cornification could adversely impact hoof horn quality in ulceration.
Involucrin is a structural protein expressed during formation of the
cornified envelope in suprabasal keratinocytes. We proposed
expression and distribution of involucrin would be altered in ulcerated
sole region. Immuofluorescent stains of normal and ulcerated
epidermal-dermal tissues of the sole region were prepared with
anti-involucrin primary antibody and FITC conjugated secondary
antibodies. Expression of involucrin in normal tissues was evenly
distributed throughout the cytoplasm of suprabasal keratinocytes across
several suprabasal layers of epidermis. Keratinocyte nuclei were
clearly visible as symmetric, circular unstained areas within the
cytoplasm. Ulceration was associated with increased, highly irregular
intensity of cytoplasmic immunofluorescence that obscured keratinocyte
nuclei and exended across several suprabasal strata. Areas of
irregularly increased immunofluorescence of the epidermis were
interspersed with areas of less intense, more even fluorescence.
Disturbed keratinocyte homeostasis in ulcerated sole regions may be
manifest as altered patterns of involucrin expression. (Funding
provided by the University of Delaware’s Undergraduate Research Program
and by the USDA.)
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The Function of Lippolysaccharide in Symbiotic Root Nodule Formation Corinna L. Willis1, D. Janine Sherrier, and Heather Danysh 1Lincoln University of Missouri Leguminous plants interact with
rhizobia, soil microbes, to form symbiotic root nodules. The
relationship is specific and is dependent on many factors including
flavonoids secreted by the host plant and the lippolysaccharides (LPS)
membrane of the bacteria. In previous studies we found the
long-chain fatty acid to be crucial to the development of
nodules. The focus of this research was on the function of the
LPS epitope in the establishment of this mutualistic
relationship. Soybean (Glycine max Williams 82) plants were
inoculated with either a wild type bacteria, Bradyrhizobium japonicum
USDA 110, which has 27-hydroxyoctacosanoic acid in its tetraacylated
lipid A or mutant bacteria, Bradyrhizobium japonicum WC3807, which
lacks 27-hydroxyoctacosanoic acid in its structure. The
progression of symbiosis was then documented using confocal
microscopy. Specifically, we evaluated four stages of the
relationships: 1. bacterial binding to the root hairs, 2. root
hair deformation, 3. infection thread formation 4. nodule
formation. We found that the mutant and wild type bacteria bind
to the root hair surface, and induce root hair deformation. Work
is on-going to determine if infection threads and nodules are induced
by infection with each of the bacterial stains. Support for this
work was obtained through the National Science Foundation (NSF)
Experimental Program to Stimulate Competitive Research (EPSCoR), Grant
EPS-0447610 and NSF Grant 05-0520586.
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IMPACT OF NON-NATIVE PLANTS ON GRAY CATBIRD (Dumetella carolinensis) ABUNDANCE IN SUBURBAN FOREST Jamie R. Zaccaria1, Amanda M. Conover1, Christopher K. Williams1, and Vincent D’Amico2 1 Dept. of Entomology and Wildlife Ecology, University of Delaware. 2U.S. Forest Service. Due to increasing urban
development into forested areas in the United States, the quality of
habitat for songbird communities has been impacted as the forested area
becomes fragmented and invaded by non-native plant species. It has been
hypothesized that the density of non-native vegetation can negatively
affect populations of songbirds in these fragmented areas. The
objective of this project is to estimate abundance and occupancy of the
gray catbird (Dumetella carolinensis) as a function of native plant
density. We collected data at 100 random plots within forested areas,
each 25m from a field edge within and around New Castle County,
Delaware. To examine the gray catbird abundance and occupancy at each
plot, five minute passive listening surveys were conducted three times
between 15 May and 6 August 2009. Vegetation composition was also
measured within each survey plot at three intervals (at the edge, 25m
from the edge and 50m from the edge). Measurements of understory
structure and species composition were taken along a five meter
transect at each distance interval from the field edge. The results of
this research can be used by land managers to better understand and
maintain fragmented and invaded areas to benefit songbird communities.
This project was supported by a grant by the United States Forest
Service.
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